Qualifications

Experience in large-scale genetics studies involving physicians and scientists from different areas

• Leading/led the analysis in the following studies
  • Endometrial cancer project, samples from 96 patients
  • Genome-wide Mutation Landscape in POLE^P286R Engineered Mice
  • Kidney Cancer Pprojects, 697 tumor and normal samples from 219 patients
  • PUUMA MI and plasma lipid association study, 10030 samples from China
  • HUNT MI and plasma lipid association study, 6000 samples from Norway
• Paticipate in the following studies
  • NHLBI Exome sequencing project (ESP), 5500 samples
  • GLGC meta-analysis of plasma lipid association study, >300000 samples

Experience in management, analysis and interpretation of large-scale genomics/genetics data

• DNA sequencing (Whole genome sequencing, whole exome sequencing, target sequencing)
• Exome sequencing
• RNA sequencing
• Ribosome profiling (ribo-seq)
• Microarray: Agilent SNP array, Illumina exome chip, etc

Experience in developing bioinformatics pipelines, methods and databases

• Development of a new method to identify somatic copy number alterations (DEFOR)
• Development of pipeline for next generation sequencing data
• Development of PlantTFDB

Progamming

• Proficient in linux; Linux server management (Ubuntu, ArchLinux and Gentoo)
• Programing using C, Perl, Python and Bash
• Designing and implementing statistical models using R
• Database management using MySQL and SQLite
• Web development using PHP, HTML and JavaScript